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  Publications - Journal Papers
 
Bioinformatics Institute published reports in peer reviewed journals in the field of bioinformatics, computational biology, systems biology, medical informatics and grid computing.
  1991-1999 | 2000 | 2001 | 2002 | 2003 | 2004 | 2005 | 2006 | 2007
 
 
Title Published in Author
An Efficient Hillclimbing-based Watershed Algorithm and its Prototype Hardware Architecture Journal of Signal Process Chinta Rambabu, Indrajit Chakrabati
Analysis of protein processing by N-terminal proteomics reveals novel species-specific substrate determinants of granzyme B orthologs Molecular Cellular Proteomics Petra Van Damme, Sebastian Maurer-Stroh, Kim Plasman, Joost Van Durme, Niklaas Colaert, Evy Timmerman, Pieter-Jan De Bock, Marc Goethals, Frederic Rousseau, Joost Schymkowitz, Joel Vandekerckhove, Kris Gevaert
Automated Protein Distribution Detection in High-Throughput Image-Based siRNA Library Screens Journal of Signal Processing Systems 2008 Yan Nei Law, Stephen Ogg, John Common, David Tan, E.Birgette Lane, Andy M. Yip, Hwee Kuan Lee
Candidate List of yoUr Biomarker (CLUB): A Web-based Platform to Aid Cancer Biomarker Research Biomarker Insights Bernett T.K. Lee, Lailing Liew, Jiahao Lim, Jonathan K.L. Tan, Tze Chuen Lee, Pardha S. Veladandi, Yun Ping Lim, Hao Han, Gunaretnam Rajagopal, N. Leigh Anderson
Editorial Overview : Theory and simulation Current Opinion in Structural Biology 2008, Vol. 18, Issue 2, 131-133 Juan Fernandez-Recio, Chandra Verma
Generation of Nucleophilic Character in the Cys25/His159 Ion-Pair of Papain Involves Trp177 but not Asp158 Biochemistry 2008 Sheraz Gul, Syeed Hussain, Mark P. Thomas, Marina Resmini, Chandra S. Verma, Emrys W. Thomas, and Keith Brocklehurst
Improving the Accuracy of Continuous Aggregates and Mining Queries on Data Streams under Load Shedding International Journal of Business Intelligence and Data Mining/Vol. 3, No. 1, 2008 Yan Nei Law, Carlo Zaniolo
Incorporating the amino acid properties to predict the significance of missense mutations Amino Acids Tze-Chuen Lee, Ann S.G. Lee, Kuo-Bin Li
Linear Analogs of Human Defensin 3: Concepts for Design of Antimicrobial Peptides with Reduced Cytotoxicity to Mammalian Cells ChemBioChem, Vol 9, Issue 6, Apr 2008, Pg 964-973 Shouping Liu, Lei Zhou, Jing Li, Anita Suresh, Chandra Verma, Yong Hwee Foo, Eric P.H. Yap, Donald T. H. Tan, Roger Beuerman
Molecular simulations of protein dynamics: new windows on mechanisms in biology Embor Reports Vol 9, No. 2, 2008 Guy G. Dodson, David P. Lane, Chandra S. Verma
Multiple Peptide Conformations Give Rise to Similar Binding Affinities: Molecular Simulations of p53-MDM2 Journal of the American Chemical Society Shubhra Ghosh Dastidar, David P. Lane and Chandra S. Verma
On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation Biology Direct 2008 Wong Wing Cheong, Marie Loh, Frank Eisenhaber
PDGF, TGF-b and FGF signaling is important for differentiation and growth of mesenchymal stem cells (MSCs): transcriptional profiling can identify markers and signaling pathways important in differentiation of MSC into adipogenic, chondrogenic and ostoegenic lineages Blood, 15 July 2008, Vol. 112, No. 2, pp. 295-307 doi:10.1182/blood-2007-07-103697 Felicia Ng, Shayne Boucer, Susie Koh, Konduru SR Sastry, Lucas Chase, Uma Lakshmipathy, Cleo Choong, Zheng Yan, Mohan C Vemuri, Mahendra S Rao, Vivek Tanavde
pFlexAna: detecting conformational changes in remotely related proteins Nuclei Acids Research 2008 Anshul Nigham, Lisa Tucker-Kellogg, Ivana Mihalek, Chandra Verma, David Hsu
Profiling microRNA Expression in Hepatocellular Carcinoma reveals microRNA-224 Up-regulation and Apoptosis Inhibitor-5 as a microRNA-224-Specific Target The Journal of Biological Chemistry 2008 Yu Wang, Alvin T.C. Lee, Joel Z. I. Ma, Jingbo Wang, Jianwei Ren, Yuchen Yang, Erwin Tantoso, Kuo-Bin Li, London L.P.J Ooi, Patrick Tan, Caroline G.L. Lee
Stability of the core domain of p53: insights from computer simulations BMC Bioinformatics 2008 A. Madhumalar, Derek J. Smith, Chandra Verma
The C-terminus of PRK2/PKNy is required for optimal activation by RhoA in a GTPdependent manner Archives of Biochemistry and Biophysics. Wee Guan Lim, Xiao Chen, Jun-ping Liu, Bee Jen Tan, Shufeng Zhou, Adam Smith, Nathaniel Lees, Liansheng Hou, Fukang Gu, Xi Yong Yu, Yaomin Du, Derek Smith, Chandra Verma, Ke Liu and Wei Duan
Updates on p53: modulation of p53 degradation as a therapeutic approach British Journal of Cancer A Dey, CS Verma, DP Lane
Using Multivariate Curve Resolution to Improve Proteomic Mass Spectra Classification Chemometrics and Intelligent Laboratory Systems, doi:10.1016/j/chemolab.2008.07.002 Chen Li