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Dr. Mallur Srivatsan MADHUSUDHAN
Principal Investigator
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| Areas of Research Interest |
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- Predicting the composition, and modelling the 3D structures of biomolecular complexes
- Protein structure modelling and functional annotation
- Protein-ligand docking
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| Biography |
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| Dr. M. S. Madhusudhan joined the Bioinformatics Institute as a Principal Investigator in 2008. He received a Masters degree in Physics from the University of Pune and a PhD in Biophysics from the Molecular Biophysics Unit, Indian Institute of Science. This was followed by post-doctoral work in the lab of Andrej Sali at the Rockefeller University and University of California, San Francisco. |
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| Selected Publications |
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- Nguyen MN, Tan KP, Madhusudhan MS.
CLICK--topology-independent comparison of biomolecular 3D structures.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W24-8. Epub 2011 May 20.
PMID: 21602266 [PubMed - in process]
- Nguyen MN, Madhusudhan MS.
Biological insights from topology independent comparison of protein 3D structures.
Nucleic Acids Res. 2011 Aug;39(14):e94. Epub 2011 May 19.
PMID: 21596786 [PubMed - in process]
- Tan KP, Varadarajan R, Madhusudhan MS.
DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W242-8. Epub 2011 May 16.
PMID: 21576233 [PubMed - in process]
- Knehans T, Schüller A, Doan DN, Nacro K, Hill J, Güntert P, Madhusudhan MS, Weil T, Vasudevan SG.
Structure-guided fragment-based in silico drug design of dengue protease inhibitors.
J Comput Aided Mol Des. 2011 Mar;25(3):263-74. Epub 2011 Feb 23.
PMID: 21344277 [PubMed - indexed for MEDLINE]
- Madhusudhan MS, Webb BW, Marti-Renom MA, Eswar N, Sali A.
Alignment of multiple protein structures based on sequence and
structure features.
Protein Eng Des Sel. 2009 Sep;22(9):569-74. Epub 2009 Jul 8
PMID: 19587024
- Bajaj K, Madhusudhan MS, Adkar BV, Chakrabarti P, Ramakrishnan C, Sali A, Varadarajan R.
Stereochemical criteria for prediction of the effects of proline mutations on protein stability.
PLoS Comput Biol. 2007 Dec;3(12):e241.
PMID: 18069886 [PubMed - indexed for MEDLINE]
- Davis FP, Braberg H, Shen MY, Pieper U, Sali A, Madhusudhan MS.
Protein complex compositions predicted by structural similarity.
Nucleic Acids Res. 2006 May 31;34(10):2943-52. Print 2006.
PMID: 16738133 [PubMed - indexed for MEDLINE]
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Please contact us by email if you wish a reprint from any of the selected publications. |
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